PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149820.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 1382aa    MW: 154348 Da    PI: 7.2454
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.001212651290123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                      y+C    C++sFs+  +L  H r+ +
  XP_009149820.1 1265 YQCDmeGCTMSFSSEKQLSLHKRNiC 1290
                      99********************9877 PP

2zf-C2H215.16.8e-0512901312323
                      ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                      Cp   Cgk F ++ +L++H+r+H
  XP_009149820.1 1290 CPvkGCGKNFFSHKYLVQHQRVH 1312
                      9999*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005454.1E-171960IPR003349JmjN domain
PROSITE profilePS5118314.2842061IPR003349JmjN domain
PfamPF023751.7E-152154IPR003349JmjN domain
SMARTSM005581.7E-54198367IPR003347JmjC domain
PROSITE profilePS5118434.513201367IPR003347JmjC domain
SuperFamilySSF511971.24E-27213384No hitNo description
PfamPF023732.4E-37231350IPR003347JmjC domain
Gene3DG3DSA:3.30.160.600.00112641287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.412651287IPR015880Zinc finger, C2H2-like
SMARTSM003550.0112881312IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.60912881317IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-712891316IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012901312IPR007087Zinc finger, C2H2
SuperFamilySSF576676.91E-1113041346No hitNo description
Gene3DG3DSA:3.30.160.602.4E-1013171341IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.80113181347IPR007087Zinc finger, C2H2
SMARTSM003550.001513181342IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013201342IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-813361370No hitNo description
Gene3DG3DSA:3.30.160.606.9E-1013421371IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.713481374IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.49213481379IPR007087Zinc finger, C2H2
PROSITE patternPS00028013501374IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1382 aa     Download sequence    Send to blast
MAVSEQSQDV FPWLKSLPVA PEFRPTLAEF QDPMAYICKI EEEASRYGIC KIVPPVPPSS  60
KKTAINNLNR SLAARARARA RDGGKPDYDG GPTFTTRQQQ IGFCPRRQRP VQRPVWQSGE  120
RYTFDEFEFK AKNFEKSYLK KCGKKGSVSP LEVETLYWRA SVDKPFSVEY ANDMPGSAFV  180
PLSLAAARRR ESGGDCGTVG ETAWNMRAMA RAEGSLLKFM KEEIPGVTSP MVYIAMMFSW  240
FAWHVEDHDL HSLNYLHMGA GKTWYGVPKD AAMAFEEVVR VHGYGEELNP LVTFSTLGEK  300
TTVMSPEVFV RAGIPCCRLV QNPGDFVITF PGAYHSGFSH GFNFGEASNI ATPQWLRMAK  360
DAAIRRASIN YPPMVSHLQL LYDYALALGS RVPDSIHNKP RSSRLKDKKK SEGEKLTNEL  420
FVQNIIHNNE LLHSLGKGSP IALLPQSSSD VSVCSDVRIG SHLGANQGQT TLLIKSEDLS  480
SDSVMVSLSN GVKEKFTSLC ERNRDHLASK EDETQGTSTD VERRKNNGAV GLSDQRLFSC  540
VTCGVLSFDC VAIIQPKEAA ARYLMSADCS FLNDWTVASG SGNLGQDVVM PPSGKQDVGD  600
LYNAPVQTPY HSTTKTVDQR TSSSSLTKES GALGLLASAY GDSSDSEEED HKGLDNPVSD  660
EVACVLEASS FVTDGNDEAG NGLSSALNSQ GLTCEKGKEV DVSHANLSKG GNASSVEITL  720
PFIPRSDDDF SRLHVFCLEH AAEVEQRLHP IGGINIMLLC HPDYPRIEAE GKVVAKELGV  780
NHEWNYTEFK NVTREDEETI QAALANVEAK AGNSDWAVKL GINLSHSAIL SRSPLYSKQM  840
PYNSVIYNVF GRTSPATPQV SGIRSSRQRK YVAGKWCGKV WMSHQVHPFL LEEDFEGEET  900
ERSHLRAALD EDVTVHGNDS RDATTMFGRK YSRKRKARGK AAPRKKLTSF KREAGVSDDT  960
SEDHSYKQQW RAYGDEEESY FETGNEVSGD SSNQMSDQQQ LKGVESDDDE VSERSLGQEY  1020
TVRREYASSE SSKENGFQVY REDQPMYGDN DMYRHPRGIP RSKRTKVFRD LVSYDSEDQQ  1080
RERVFTSDAQ TSRMDDEYDS EENSLEEQDF CSSGKRQTRS IAKRKVKTKI VQSLGDTGGR  1140
TLLQSGSRKK MKELDSYMEG PSTRLRVRTP KPSRGSSATK PKKTGKKGRN VSFSEVASEE  1200
EVEENEEESE EASTRIRVRT LKPPRRSLET KPKKTGKKGS NVSSLSGVAS EEEVEEDEQE  1260
ECLPYQCDME GCTMSFSSEK QLSLHKRNIC PVKGCGKNFF SHKYLVQHQR VHSDERPLKC  1320
PWKGCKMTFK WAWSRTEHIR VHTGERPYVC AEPGCSQTFR FVSDFSRHKR KTGHSAKKIK  1380
KK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4igo_A3e-482035116360Os05g0196500 protein
4igp_A3e-482035116360Os05g0196500 protein
4igq_A3e-482035116360Os05g0196500 protein
5fwj_A6e-48183567322HISTONE DEMETHYLASE JARID1C
5fwj_B6e-48183567322HISTONE DEMETHYLASE JARID1C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1933945KRKARGKAAPRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149820.10.0PREDICTED: lysine-specific demethylase REF6 isoform X2
SwissprotQ9STM30.0REF6_ARATH; Lysine-specific demethylase REF6
TrEMBLM4DNH30.0M4DNH3_BRARP; Uncharacterized protein
STRINGBra018060.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6